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Details




NbTI14C05

Annotation
Solyc09g007410.2.1;genomic_reference:SL2.50ch09 gene_region:985216-988218 transcript_region:SL2.50ch09:985216..988218- functional_description:"Calmodulin-binding protein (AHRD V1 **-* C5HYF8_BRARP); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "
ref|XP_009789870.1|;PREDICTED: protein IQ-DOMAIN 1-like [Nicotiana sylvestris]
NbS00016391g0006.1;protein AED:0.02 eAED:0.02 QI:230|1|0.66|1|0.6|0.5|6|317|467; (*GB) gi|225439898|ref|XP_002279479.1| (e_value=9e-138) PREDICTED: protein IQ-DOMAIN 1-like [Vitis vinifera];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=1e-68) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT5G03040.3 (e_value=2e-96) | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406 REVERSE LENGTH=461;; (*ITAG) Solyc09g007410.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:985216-988218 transcript_region:SL2.40ch09:985216..988218- functional_description:"Calmodulin-binding protein (AHRD V1 **-* C5HYF8_BRARP); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region ";
AT5G03040.3;| Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406 REVERSE LENGTH=461
GO ID (Nr annotation)
GO:0005515
GO ID (Arabidopsis annotation)
GO:0005515
GO ID (Tomato annotation)
GO:0005515
GO ID (Niben annotation)
GO:0005515
Sequence
>NbTI14C05
GGGATCTTTTTGTTTTTCTATTTTGGCGTTGGAGATATATCTGAAATAAAGCTAAGTTCTTTCAAGAACGCATCAAAGAAATGGCACATTGAGGAATGAA
AAGAAGATGGGGAGGAAAGGAAGCTGGTTTTCTTCTGTAAAGAAGGCTCTGAGCCCTGATCCTAAGGAAAAGGCAGACAAGAAAGCAAGTAAATCAAAGA
AGAAATGGTTCGGGAAAGAAAAGTGCACGCTCCCCGATTCTTCGACTGTGGTGACCACCACAGTGTCACCTCCTCGTCCCGCCCCTCCCGTGGAAGAGGT
CAAATTTGATGAAGTGGAAGAGGAGCAGACGAAATATGCTCATTCGGTCGCAGTTGCCACAGCTGCTGCTGCTGAAGCTGCTGTTGCAGCTGCCCACGCT
GCTGCAGAGGTTGTTCGATTAACTACAGCGAACCAAATCACTGACAAATCAAATGAGGAACTAGCTGCAATCCGAGTTCAGACTGCCTTCCGAGGTTATC
TGGCGAGGAGGGCATTGAAGGCCTTAAGGGGACTCGTCAGACTCAAATCACTTGTTGATGGACCTACTGCCAAACAACAAACTGCAAATGCTCTCAAATG
CATGCAGACTTCATCTCGTGTTCAGTCTCAGATTAGCTCTAGAAGGATCAGGATGTTGGAGGAGAACCGAGCTCTCCAGAGGCAGCTTATGCAGAAGCAT
GCGAAAGAACTCGAGAGTTTGAGGAGAGGAGAGGAATGGGGATGATAGTCTACAATCACAGGAGC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

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