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Details




NbTI14D09

Annotation
Solyc02g069860.2.1;genomic_reference:SL2.50ch02 gene_region:34253995-34260017 transcript_region:SL2.50ch02:34253995..34260017- functional_description:"Nuclear transcription factor Y subunit A-7 (AHRD V1 ***- B6TY54_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "
ref|XP_009759702.1|;PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X4 [Nicotiana sylvestris]
NbS00026254g0010.1;protein AED:0.37 eAED:0.41 QI:0|0.66|0.5|1|1|1|4|0|211; (*GB) gi|225444037|ref|XP_002282043.1| (e_value=8e-68) PREDICTED: nuclear transcription factor Y subunit A-7 isoform 1 [Vitis vinifera];; (*SWP) sp|Q84JP1|NFYA7_ARATH (e_value=7e-41) Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1;; (*TAIR) AT1G30500.2 (e_value=6e-42) | Symbols: NF-YA7 | nuclear factor Y, subunit A7 | chr1:10804736-10805896 REVERSE LENGTH=190;; (*ITAG) Solyc02g069860.2.1 (e_value=9e-94) genomic_reference:SL2.40ch02 gene_region:34253995-34260017 transcript_region:SL2.40ch02:34253995..34260017- functional_description:"Nuclear transcription factor Y subunit A-7 (AHRD V1 ***- B6TY54_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B ";
AT1G30500.2;| Symbols: NF-YA7 | nuclear factor Y, subunit A7 | chr1:10804736-10805896 REVERSE LENGTH=190
GO ID (Nr annotation)
GO:0003700 GO:0006355
GO ID (Arabidopsis annotation)
GO:0003700 GO:0006355
GO ID (Tomato annotation)
GO:0003700 GO:0006355
GO ID (Niben annotation)
GO:0003700 GO:0006355
Sequence
>NbTI14D09
TCACACTGAATAAAAGCTCTGAAGAAAGAAAAGAAGACAGGAAACGCCAGAAATAAAACCGCTTACTATTTATTTTCTATTCTAAAAGGCTTGTTAATTT
GAGGATTCTGTGACAAGCAGTGTCATGACGTCCTCGCTTCATTATCATTCAGGTGGTAGTGAGAATGAACTGCCAGAGAAGCAATCAGAGGCTCACAGCG
AGTCTTCATCCCCTGCTACTGGAATGTCTGTCCCTGGAACTGTAACACCAAATATGCACTATGTGATGCCCGCTCAACTTGGCAATGAAAATGCTATGGC
TCAAACAGCTTATCCTTATCCAGACCCATACTATAGGAGCATCTTCGCACCATACGATGCACAGCCTTATCCTACACAACCTTATCCAGCACAACCAATG
GTTCACGTTCAGCTTATGGGAATTCAACAAGCTGTTGTTCCTTTGCCATCAGACGCGATAGACGAACCTGTTTTTGTTAATGCAAAACAGTATCATGGCA
TCTTGAGGCGTCGACAATCTCGCGCGAAAGCTGAGTCAGAAAAGAAACTTCTGAAAGCTAGGAAGCCCTACTTGCATGAATCACGCCATTTGCATGCACT
GAAAAAGAGCTAGAGGATGTGGGGGTCGTTTTACAGCGAAGAAAACTGATAACCAGCCGAAAAGAGGGCGAATCAGGTGATAACTCACAGGTCAACATTA
A
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit