Noble Research Institute, LLC   Noble Research Institute | VIGS Database  
      VIGS Phenomics and Functional Genomics Database  
Details




NbTI14F06

Annotation
Solyc04g008740.2.1;genomic_reference:SL2.50ch04 gene_region:2398964-2404186 transcript_region:SL2.50ch04:2398964..2404186- functional_description:"Pyruvate kinase (AHRD V1 **** Q3S1N4_SOLTU); contains Interpro domain(s) IPR001697 Pyruvate kinase "
emb|CBI35347.3|;unnamed protein product [Vitis vinifera]
NbS00003269g0019.1;protein AED:0.03 eAED:0.03 QI:24|0.33|0|0.5|1|1|4|0|431; (*SWP) sp|P22200|KPYC_SOLTU (e_value=0.0) Pyruvate kinase, cytosolic isozyme OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G08570.1 (e_value=0.0) | Symbols: | Pyruvate kinase family protein | chr5:2778433-2780300 FORWARD LENGTH=510;; (*ITAG) Solyc04g008740.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2398964-2404186 transcript_region:SL2.40ch04:2398964..2404186- functional_description:"Pyruvate kinase (AHRD V1 **** Q3S1N4_SOLTU); contains Interpro domain(s) IPR001697 Pyruvate kinase ";
AT5G08570.1;| Symbols: | Pyruvate kinase family protein | chr5:2778433-2780300 FORWARD LENGTH=510
GO ID (Nr annotation)
GO:0000287 GO:0004743 GO:0030955 GO:0006096
GO ID (Arabidopsis annotation)
GO:0000287 GO:0004743 GO:0030955 GO:0006096
GO ID (Tomato annotation)
GO:0000287 GO:0004743 GO:0030955 GO:0006096
GO ID (Niben annotation)
GO:0000287 GO:0004743 GO:0030955 GO:0006096
Sequence
>NbTI14F06
GGGATGGTTCAGATCTTGTCAATGTTCGCAAGGTTCTTGGTCCACATGCCAAGCGCATTCAATTAATGTCAAAGGTTGAGAATCAAGAGGGGGTAGTTAA
CTTTGACGAAATCCTGCGTGAGACTGATTCTTTTATGGTTGCTCGAGGTGATCTTGGAATGGAAATTCCAGTTGAGAAGATTTTCTTGGCCCAGAAAATG
ATGATATACAAGTGTAATCTTGCTGGTAAGCCTGTGGTAACTGCAACTCAGATGCTTGAATCAATGATCAAATCTCCACGACCTACCCGTGCTGAGGCAA
CCGATGTGGCTAATGCTGTCTTGGATGGCACCGACTGCGTTATGCTTAGTGGGGAGAGTGCAGCTGGGGCTTATCCTGAGCTGGCGGTAAAGATCATGTC
AAAAATCTGTATCGAGGCAGAGTCTTCACTTGACTATGGGGCTATCTTCAAGGAAATGATCAGGTGTACCCCTCTTCCAATGAGTCCACTAGAGAGTCTA
GCGTCATCCGCTGTCCGCACGGCTAACAAGGCTCATGCAAAACTCATTGTTGTCCTGACACGTGGTGGGACTACGGCAAAGCTGGTTGCCAAGTATAGGC
CTGCTGTTCCTATTCTATCTGTCGTTGTGCCTGTCTTGATCACAGATTCTTTTGATTGGTAGCGAAAGGGCTCTGCAAACCTGGTGATGCTGTTGTGGCA
CTTCATCGTATTGGTGCTGCATCCGTTATCAAGATTTGCCTCGTCAAGTAATCTCTGTGTCCAAACTTTTCCAA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit