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Details




NbTI14G09

Annotation
Solyc04g081320.2.1;genomic_reference:SL2.50ch04 gene_region:62941333-62944465 transcript_region:SL2.50ch04:62941333..62944465- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001305 Heat shock protein DnaJ, cysteine-rich region "
ref|XP_009783022.1|;PREDICTED: protein disulfide-isomerase LQY1 [Nicotiana sylvestris]
NbS00004638g0012.1;protein AED:0.34 eAED:0.34 QI:0|1|1|1|0|0.2|5|404|158; (*GB) gi|118489193|gb|ABK96403.1| (e_value=1e-71) unknown [Populus trichocarpa x Populus deltoides];; (*SWP) sp|Q8GSJ6|LQY1_ARATH (e_value=2e-62) Protein disulfide-isomerase LQY1 OS=Arabidopsis thaliana GN=LQY1 PE=1 SV=1;; (*TAIR) AT1G75690.1 (e_value=1e-63) | Symbols: | DnaJ/Hsp40 cysteine-rich domain superfamily protein | chr1:28422273-28423170 REVERSE LENGTH=154;; (*ITAG) Solyc04g081320.2.1 (e_value=9e-90) genomic_reference:SL2.40ch04 gene_region:62941333-62944465 transcript_region:SL2.40ch04:62941333..62944465- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001305 Heat shock protein DnaJ, cysteine-rich region ";
AT1G75690.1;| Symbols: | DnaJ/Hsp40 cysteine-rich domain superfamily protein | chr1:28422273-28423170 REVERSE LENGTH=154
GO ID (Nr annotation)
GO:0031072 GO:0051082
GO ID (Arabidopsis annotation)
GO:0031072 GO:0051082
GO ID (Tomato annotation)
GO:0031072 GO:0051082
GO ID (Niben annotation)
GO:0031072 GO:0051082
Sequence
>NbTI14G09
ATAGCCAAACAAAGAAGCAAAACTGAATCCATAACCGAAATATAGAATAGAAAAGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAATCTCCAT
TTATTAGCTGCCCTCTTAAACTCCCTTCTTCTTCTTCTACTTTCTCTCAGAAGTTTCATCAAACACATCGTTCACCAAATTCTTACCCATGTGTTAGAGC
TGTGGATCTTGATCAAAACACGGTTATTGCAATTACGGTTGGGGTAGTCAGTGTTGCTATTGGAATTGGAATTCCAGTTTTTTATGAGACCCAAATCGAT
AATGCTGCCAAACGAGACAATACGCAGCACTGTTTCCCCTGCAGTGGCAGTGGTGCACAGAAATGCAGATTTTGCTTGGGTACTGGCAGTGTGACAGTGG
AGCTTGGTGGGGGTGAGACAGAAGTCTCCCGGTGCATCAACTGCGATGGCGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAGCCTCG
GTACCTTGATCGCAGGGAATTTAAGGACGACGATTAAGTGGAAGAACATTCACCATGGATGCCACAGCTTGTTTATTGTCTAGAAGACCTTGTCATTTTG
ACCAGGATATATTGACTAAATTTATGTAAAATTCAATTCTCCTTCTCCTCTCTCTACCTTTTGTCAGTTCAATTTTTCCTTTTGCATTTTGTTCT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit