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Details




NbTI14G11

Annotation
Solyc05g005590.2.1;genomic_reference:SL2.50ch05 gene_region:419694-425339 transcript_region:SL2.50ch05:419694..425339+ functional_description:"Ribosomal RNA large subunit methyltransferase N (AHRD V1 ***- C6E0H5_GEOSM); contains Interpro domain(s) IPR004383 Conserved hypothetical protein CHP00048 "
ref|XP_009604057.1|;PREDICTED: uncharacterized protein LOC104098911 [Nicotiana tomentosiformis]
NbS00044828g0004.1;protein AED:0.24 eAED:0.26 QI:29|0.75|0.66|1|0.87|0.77|9|0|512; (*GB) gi|296086557|emb|CBI32146.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q74E53|RLMN_GEOSL (e_value=2e-87) Ribosomal RNA large subunit methyltransferase N OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=rlmN PE=3 SV=1;; (*TAIR) AT1G60230.1 (e_value=0.0) | Symbols: | Radical SAM superfamily protein | chr1:22212223-22214346 REVERSE LENGTH=458;; (*ITAG) Solyc05g005590.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:419694-425339 transcript_region:SL2.40ch05:419694..425339+ functional_description:"Ribosomal RNA large subunit methyltransferase N (AHRD V1 ***- C6E0H5_GEOSM); contains Interpro domain(s) IPR004383 Conserved hypothetical protein CHP00048 ";
AT1G60230.1;| Symbols: | Radical SAM superfamily protein | chr1:22212223-22214346 REVERSE LENGTH=458
GO ID (Nr annotation)
GO:0005737 GO:0008173 GO:0006364
GO ID (Arabidopsis annotation)
GO:0005737 GO:0008173 GO:0006364
GO ID (Tomato annotation)
GO:0005737 GO:0008173 GO:0006364
GO ID (Niben annotation)
GO:0005737 GO:0008173 GO:0006364
Sequence
>NbTI14G11
CGATTCGCATCTCCGGCGGCGGCAGCTCTGCTTTGCTTGGAACATCTTTTCCCTTCTCCAATTACACTAAATGTCCATTAAAACCCAAATCTTTTCTAAA
GCTGTTTCCTGCAAAAACAACACCCGTCGTCACCACTCTCCATTATCGTTTAATTACGACACCTCAACATTCTTCTGCCTCCTCTCATGTTCATCCAACA
CCTCAAACTGAACTTCCTATATCATCTGGAGGTGATGGCCAAAATGGGTATCCATTGAAGGACTCAAAAGTGGTTTTGAAAGGGATGAGATATGCTGAAC
TTGAGAAATGGGTTCAGTCACATGGTTATAGGCCTGCTCAGGCTCTGATGTTGTGGAAACGTCTTTACGGGAATAATAATAATATTTGGGCGCAATGCAG
TGAAGAACTAGAAGGTTTGAATAAAGATTTCAGGAAAATGTTGAGTGAACATGCTGAATTTAAGACGTTAAACTTGAAGGATGTTTTGACCGCGTCTGAT
GGAACTAAAAAGATGTTATTCAAGTTGGAAGATGGTCTGGTAATAGAAACTGTTGTGATACCTTGTGAGAGCGGCAGGAACACCGTCTGTATATCTAGTC
AAGTAGGTTGTGCCATGAATTGTCAGTTTTGCTACACTGGGCAGGATGGGTCTGAAGAGAAACTTATCTACATCTGAGATAGTTGAACAGGGCTGTTTTA
GCTCGGA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit