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Details




NbTI15A06

Annotation
Solyc01g010880.2.1;genomic_reference:SL2.50ch01 gene_region:6317605-6322790 transcript_region:SL2.50ch01:6317605..6322790- functional_description:"E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "
ref|XP_009765411.1|;PREDICTED: uncharacterized protein LOC104216961 isoform X4 [Nicotiana sylvestris]
NbS00039408g0004.1;protein AED:0.31 eAED:0.31 QI:214|1|1|1|0.62|0.66|9|472|295; (*GB) gi|356499805|ref|XP_003518727.1| (e_value=4e-97) PREDICTED: uncharacterized protein LOC100779674 [Glycine max];; (*TAIR) AT2G02960.3 (e_value=4e-88) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:862346-863980 REVERSE LENGTH=271;; (*ITAG) Solyc01g010880.2.1 (e_value=9e-142) genomic_reference:SL2.40ch01 gene_region:6317605-6322790 transcript_region:SL2.40ch01:6317605..6322790- functional_description:"E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type ";
AT2G02960.3;| Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:862346-863980 REVERSE LENGTH=271
GO ID (Nr annotation)
GO:0016021 GO:0008270
GO ID (Arabidopsis annotation)
GO:0031012 GO:0044421 GO:0003008 GO:0009790 GO:0044763 GO:0048705 GO:0050794 GO:0051216 GO:0051716 GO:0065008
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005576 GO:0005811 GO:0031419 GO:0006824 GO:0015889
Sequence
>NbTI15A06
ACCTCTTGATTTACATGATCCTCGCTTTTTGGCGATTAGAGAGGCTGAACGTCAACTTTTGGAAGCTGAATATGATGATTATAATGCCACAAATGCAAGT
GGCGTTGCATTCTGCCGTTCTGCTGCTCTAATTTTAATGGCTTTTCTGCTGTTGCGCCATGCATTACCTGTAGCAGATGCAGACGAAGACGAAGAAGATC
CATCTGCTTTCTTCTCGCTTTTCTTGCTTCGGTTATTTGGCTTTCTTTTACCGTGCTACATCATGGTCTGGGCCATCAGCATTTTGCAGCAGCGCAGGCA
AAGAGAGGAAACAGCAGCTTTAGCAACAGCACAATTTGCATTTGTGGTACAATCTGGGCAGTCAACAGGTGTACAGTTTACCATGGCATCAGCTACACCT
TCTGTCACTGCATCGACAGACTCGTCTGTGCCTGCGCCACTGGATCGTGTTTAAAAGAGTTGTGACATGTGCATACCAGTTCCTCTTATGAAAGGTTCCA
GCAACCGTCCTCGTCTTTTAACCCTAAATGCTGCATTCTGTTTTGTAAGTAGTATTACGGATAATAGCAGCATACTGATGTTTCAAAAACCAACAATTTT
TACCAAGCTGTATATTAAATTCTTTTGATCTTGGCATGTGTAACTATAACATTTAGTACAATCTTCAC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit