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Details




NbTI15C09

Annotation
Solyc06g074300.2.1;genomic_reference:SL2.50ch06 gene_region:42312797-42316469 transcript_region:SL2.50ch06:42312797..42316469- functional_description:"Ribosomal protein (AHRD V1 ***- Q6ER67_ORYSJ); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "
ref|XP_009592971.1|;PREDICTED: 60S ribosomal protein L10a-1 [Nicotiana tomentosiformis]
NbS00010171g0006.1;protein AED:0.15 eAED:0.15 QI:86|1|1|1|0.6|0.5|6|474|216; (*GB) gi|192910762|gb|ACF06489.1| (e_value=6e-130) ribosomal protein L10a [Elaeis guineensis];; (*SWP) sp|Q8VZB9|R10A1_ARATH (e_value=2e-129) 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1;; (*TAIR) AT1G08360.1 (e_value=2e-130) | Symbols: | Ribosomal protein L1p/L10e family | chr1:2636231-2637694 FORWARD LENGTH=216;; (*ITAG) Solyc01g009520.2.1 (e_value=3e-138) genomic_reference:SL2.40ch01 gene_region:3780910-3784239 transcript_region:SL2.40ch01:3780910..3784239+ functional_description:"Ribosomal protein (AHRD V1 ***- Q6ER67_ORYSJ); contains Interpro domain(s) IPR002143 Ribosomal protein L1 ";
AT1G08360.1;| Symbols: | Ribosomal protein L1p/L10e family | chr1:2636231-2637694 FORWARD LENGTH=216
GO ID (Nr annotation)
GO:0015934 GO:0003723 GO:0003735 GO:0006412
GO ID (Arabidopsis annotation)
GO:0015934 GO:0003723 GO:0003735 GO:0006412
GO ID (Tomato annotation)
GO:0015934 GO:0003723 GO:0003735 GO:0006412
GO ID (Niben annotation)
GO:0015934 GO:0003723 GO:0003735 GO:0006412
Sequence
>NbTI15C09
ATTTTGAGCCATGAGTAAGCTTCAGAGCGATGCCCTTAGAGAAGCCATCTCTGTGATTAAGAATGATTGTGCAGAGAAGAAAAGAAAATTCACTGAGACT
ATTGAGCTCCAGATCGGGCTGAAGAACTATGATCCCCAAAAGGACAAACGTTTCAGTGGGTCCGTTAAATTGCCCCACATTCCTCGCCCTAAAATGAAGA
TTTGTATGCTTGGAGATGCTCAGCACGTTGAGGAGGCAGAAAAGATAGGTTTGGAGTACATGGATGTGGAAAGCTTGAAAAAGCTTAACAAAAATAAGAA
ATTGGTTAAGAAGCTTGCAAAGAAATACCATGCTTTCTTGGCTTCAGAGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGGCCCGGCCTGAACAAGGCG
GGCAAGTTTCCGAGTCTTGTTTCACACCAGGAGTCACTTGAATCCAAGGTTAATGAGACCAAAGCTACTATCAAGTTTCAATTGAAAAAGGTGCTCTGCA
TGGGAGTTGCTGTTGGAAACTTGGATATGGAGGAGAAACAGATCTTCCAGAATGTGCAAATGAGTGTTAATTTTCTAGTGTCGTTGTTGAAAAAGAATTG
GCAAAATGTAAGGTGCCTGTACTTGAAGAGCACCATGGGAAAGCCACAGCGTATCTTTTAAGGAGATTTTTGTTTCGCTGTTGGAAGTTTTCAGCATTTT
GGGTGTGTGAGCTATAGATACCCTTGAAATTTTGGGTAGTAGTTCTGGGTTATCTGCTTGAATACTCACAT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit