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Details




NbTI15D01

Annotation
Solyc01g112000.2.1;genomic_reference:SL2.50ch01 gene_region:89896494-89898383 transcript_region:SL2.50ch01:89896494..89898383+ functional_description:"Expansin-like protein (AHRD V1 ***- A7X331_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "
ref|XP_009606813.1|;PREDICTED: expansin-like A2 [Nicotiana tomentosiformis]
NbS00040487g0011.1;protein AED:0.29 eAED:0.30 QI:265|1|0.8|1|1|1|5|0|263; (*SWP) sp|Q9LZT4|EXLA1_ARATH (e_value=2e-114) Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1;; (*TAIR) AT3G45970.1 (e_value=2e-115) | Symbols: ATEXLA1, EXPL1, ATEXPL1, ATHEXP BETA 2.1, EXLA1 | expansin-like A1 | chr3:16896238-16897189 FORWARD LENGTH=265;; (*ITAG) Solyc01g112000.2.1 (e_value=4e-157) genomic_reference:SL2.40ch01 gene_region:89896494-89898383 transcript_region:SL2.40ch01:89896494..89898383+ functional_description:"Expansin-like protein (AHRD V1 ***- A7X331_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal ";
AT4G38400.1;| Symbols: ATEXLA2, EXPL2, ATEXPL2, ATHEXP BETA 2.2, EXLA2 | expansin-like A2 | chr4:17978675-17979665 REVERSE LENGTH=265
GO ID (Nr annotation)
GO:0005576 GO:0019953
GO ID (Arabidopsis annotation)
GO:0005576 GO:0019953
GO ID (Tomato annotation)
GO:0005576 GO:0019953
GO ID (Niben annotation)
GO:0005576 GO:0019953
Sequence
>NbTI15D01
TGAAACCAAAAAACAATATTATGGCTGTCGAATTCCTTCCGTTCCTTATCTTCCTTCTTGTCTCCTCAGCTACAGCCTGTGATCGCTGTGTTCACCAATC
AAAAGTTGCTTACTTTTCCAGTGCCTCCGCCCTTCAGTCTGGTGCGTGTGGTTATGGAGATTTAGCAATAGGCTTTAATGGGGGTCGACTTGCTGCTGCT
ATTCCTAGCCTTTACAAAGAAGGAGCTGGTTGTGGTGCTTGTTATCAGATTAGATGCAAAGACTCAACACTCTGTTCGAAAGAGGGCACAACTGTAATTG
TAACTGATCTAAATACCAATAACCAGACGGATTTTGTGATCAGTAGCCGAGCTTTTATGGCCATGGCCAATAAGGGAAAAGCTAAAGACGTTCTCAAATT
GGGAATTGCTGATGTTGAATATAAAAGAGTTCCATGTGATTACAAAAGCAAGAATTTGGCCATTCGTGTGGAAGAATCAAGTCAAAAACCAAATTATCTA
GCAATCAGCTTCTTGTACCAAGGTGGTCAAACTGAAATTGTCGCTGTCGACGTAGCTCAGGTTGGATCATCGACCTGGAATTTCCTGAGCCGAAATCACG
GAGCAATTTGGGACACAAGTAGAGTGCCAACAGGGGCATTGCAATTTAGGTTTGTGGTGACAGCAGGGTATGATGGCAAATGGTATTGGGCAAAATCAGT
GTTGCCAGCAGATTGGAAAAATGGGGTAATTTATGACACTGGACTTCAGATCACTGACATTGCTCAGAGGCTTGTTCTCCATGTGATGATGGAAACTGGA
AACTTCATTAGTGTTAAAAA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit