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Details




NbTI15F05

Annotation
Solyc01g028810.2.1;genomic_reference:SL2.50ch01 gene_region:33327242-33332361 transcript_region:SL2.50ch01:33327242..33332361- functional_description:"chaperonin (AHRD V1 ***- B4VMY1_9CYAN); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "
ref|XP_009790232.1|;PREDICTED: chaperonin 60 subunit beta 2, chloroplastic [Nicotiana sylvestris]
NbS00005183g0002.1;protein AED:0.18 eAED:0.18 QI:0|0.69|0.57|0.92|1|1|14|0|607; (*GB) gi|1762130|gb|AAB39827.1| (e_value=0.0) chaperonin-60 beta subunit [Solanum tuberosum];; (*SWP) sp|P08927|RUBB_PEA (e_value=0.0) RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2;; (*TAIR) AT3G13470.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:4389685-4392624 FORWARD LENGTH=596;; (*ITAG) Solyc01g028810.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:33327242-33332361 transcript_region:SL2.40ch01:33327242..33332361- functional_description:"chaperonin (AHRD V1 ***- B4VMY1_9CYAN); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 ";
AT1G55490.2;| Symbols: CPN60B, LEN1 | chaperonin 60 beta | chr1:20715717-20718673 REVERSE LENGTH=600
GO ID (Nr annotation)
GO:0005737 GO:0005524 GO:0042026
GO ID (Arabidopsis annotation)
GO:0005737 GO:0005524 GO:0042026
GO ID (Tomato annotation)
GO:0005737 GO:0005524 GO:0042026
GO ID (Niben annotation)
GO:0005737 GO:0005524 GO:0042026
Sequence
>NbTI15F05
GGGATGGAGTTCTAGGCCATGCTTCTAAGGTAGTGCTGACTAAGGATGCCACCACAATTGTTGGTGATGGTAGCACGCAGGACGCAGTTAATAAGCGTGT
TGCGCAGATTAAAAACCTTATAGAGGCAGCAGATCAAGATTATGAAAAAGAAAAGCTAAATGAAAGAATTGCTAAATTATCAGGAGGCGTGGCTGTTATA
CAGGTTGGAGCACAAACTGAAACTGAATTGAAAGAAAAGAAACTTAGGGTGGAAGATGCTCTTAACGCAACAAAGGCAGCTGTTGAGGAAGGTATTGTTG
TTGGTGGAGGGTGTACACTCCTGAGACTTGCTTCTAAAGTTGATGCCATCAAGGAGACCCTTGAGAATGACGAGGAGAAGGTTGGAGCTGATATTGTTAA
AAGAGCATTGAGCTATCCATTGAAGTTGATTGCTAAAAATGCTGGTGTTAATGGAAGTGTTGTCAGTGAGAAGGTTCTCTCTAGTGATAATCCAAAATTT
GGATACAATGCCGCAACTGGCAATTATGAAGACTTAATGGCTGCTGGTATTATTGACCCAACAAAGGTGGTGAGATGTTGTTTAGAGCACGCGTCATCAG
TTGCCAAGACATTCTTGATGTCAGATTGTGTGGTGGTAGAGATCAAGGAGCCTGAACCAGCAGTTGCTGGCAGCCCAATGGACAACTCAGATATGGTTAC
TAGATGATTGAATGAAGGGCTACTGATAGATAGAAGAGAAGAACTGCCTCCTGCGAGATGATAGTGGGTAGATGAACAATGTCTGGTGGCAATGCTTGAA
AGCTTTTATTTTTGTAAAACTTTAAGGT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit