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Details




NbTI15G07

Annotation
Solyc02g070310.2.1;genomic_reference:SL2.50ch02 gene_region:34670896-34672676 transcript_region:SL2.50ch02:34670896..34672676- functional_description:"Ribosomal protein L32 (AHRD V1 ***- Q45NI6_MEDSA); contains Interpro domain(s) IPR018263 Ribosomal protein L32e, conserved site IPR001515 Ribosomal protein L32e "
ref|XP_009620676.1|;PREDICTED: 60S ribosomal protein L32-1 [Nicotiana tomentosiformis]ref|XP_009620677.1| PREDICTED: 60S ribosomal protein L32-1 [Nicotiana tomentosiformis]ref|XP_009800142.1| PREDICTED: 60S ribosomal protein L32-1 [Nicotiana sylvestris]ref|XP_009800143.1| PREDICTED: 60S ribosomal protein L32-1 [Nicotiana sylvestris]
NbS00053639g0015.1;protein AED:0.13 eAED:0.13 QI:0|0.5|0|0.66|1|1|3|0|133; (*SWP) sp|P49211|RL321_ARATH (e_value=1e-81) 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2;; (*TAIR) AT4G18100.1 (e_value=7e-83) | Symbols: | Ribosomal protein L32e | chr4:10035715-10036475 REVERSE LENGTH=133;; (*ITAG) Solyc02g070310.2.1 (e_value=2e-86) genomic_reference:SL2.40ch02 gene_region:34670896-34672676 transcript_region:SL2.40ch02:34670896..34672676- functional_description:"Ribosomal protein L32 (AHRD V1 ***- Q45NI6_MEDSA); contains Interpro domain(s) IPR018263 Ribosomal protein L32e, conserved site IPR001515 Ribosomal protein L32e ";
AT4G18100.1;| Symbols: | Ribosomal protein L32e | chr4:10035715-10036475 REVERSE LENGTH=133
GO ID (Nr annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Arabidopsis annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Tomato annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Niben annotation)
GO:0005840 GO:0003735 GO:0006412
Sequence
>NbTI15G07
ACTAGTTCCGAAGGTAAGGGAGAAGAAGTGAACAACAATGGCGGTGCCTCTGCTTACCAAGAAGGTCGTTAAGAAGAGGGTTAAGAGGTTTATTAGACCC
CAGAGTGACCGCAGAATCACTGTCAAGGAAAGCTGGCGCAGACCCAAAGGTATCGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCA
ACATTGGGTATGGGTCTGACAAGAAAACCCGCCACTATCTTCCCAATGGTTTCAAGAAGTTTGTTGTGCATAATGCAAGTGAGCTTGAGGTCTTAATGAT
GCATAACAGAACTTACTGTGCAGAGATTGCACACAATGTTTCCACGAGGAAGAGGAAAGAGATTGTTGAACGAGCTGCACAGCTCGATGTTGTCATAACA
AACAAGCTTGCTAGGTTGCGCAGCCAGGAGGATGAATGAGCATTTTGCCTTTAGATATCTCTATATTGTTAGTGTTTGCACTTGTTCCTTGTGTTTGTTT
GATATAACATTCTATTTTTCCCGAAGCGGATTTTGACTTATCCTATTGCTATCAATTGCTTAAGTTTTCAGATTTT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit