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Details




NbTI15G11

Annotation
Solyc06g072040.1.1;evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch06 gene_region:40788275-40788973 transcript_region:SL2.50ch06:40788275..40788973- functional_description:"Nuclear transcription factor Y subunit C-1 (AHRD V1 **** B6SWV5_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "
ref|XP_009619035.1|;PREDICTED: nuclear transcription factor Y subunit C-1-like [Nicotiana tomentosiformis]
NbS00009113g0004.1;protein AED:0.05 eAED:0.06 QI:0|0|0.5|1|0|0.5|2|61|227; (*GB) gi|350540630|ref|NP_001234244.1| (e_value=5e-124) CONSTANS interacting protein 2a [Solanum lycopersicum];; (*SWP) sp|Q9SMP0|NFYC1_ARATH (e_value=3e-96) Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1;; (*TAIR) AT3G48590.1 (e_value=2e-97) | Symbols: HAP5A, ATHAP5A, NF-YC1 | nuclear factor Y, subunit C1 | chr3:18008893-18009938 REVERSE LENGTH=234;; (*ITAG) Solyc03g110860.2.1 (e_value=1e-127) genomic_reference:SL2.40ch03 gene_region:55647896-55652698 transcript_region:SL2.40ch03:55647896..55652698+ functional_description:"Nuclear transcription factor Y subunit C-1 (AHRD V1 **** B6SWV5_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone ";
AT3G48590.1;| Symbols: HAP5A, ATHAP5A, NF-YC1 | nuclear factor Y, subunit C1 | chr3:18008893-18009938 REVERSE LENGTH=234
GO ID (Nr annotation)
GO:0046982
GO ID (Arabidopsis annotation)
GO:0046982
GO ID (Tomato annotation)
GO:0046982
GO ID (Niben annotation)
GO:0046982
Sequence
>NbTI15G11
AGCAACAGCAGCTCCAGATGTTCTGGACCTACCAGCGCCAAGAAATCGAACAGGTTAACGATTTCAAGAACCACCAACTTCCTCTTGCCCGAATCAAGAA
GATCATGAAAGCTGACGAGGATGTCCGCATGATCTCCGCTGAAGCTCCCATTTTATTCGCCAAAGCGTGTGAGCTTTTCATTCTGGAACTCACTATTCGT
TCCTGGCTTCACGCTGAGGAAAACAAGCGTCGAACTTTACAAAAGAACGACATAGCTGCAGCGATTACGCGGACTGACATTTTTGATTTCCTTGTTGACA
TTGTTCCGAGGGATGAGATCAAGGAAGAGGGTGGTGTTGGTCTTGGGCCTGCTGGGATTGTGGGCTCCACAGCTAGTGGTGTGCCTTACTATTACCCACC
AATGGGCCAGCCTGCTCCACCGGGTGTGATGATGGGCAGGCCTGCTATGCCTGGGGTTGATCCTTCAATGTACGTTCAGCCACCGCCGTCGCAGGCGTGG
CAGTCCGTTTGGCAGACTGCTGAGGATAATTCCTATGCAAGTGGAGGCAGCAGTGGACAGGGTAACCTTGATGGTCAAAGTTAATGATCATGTTTGCTGC
TGATCCAGTCGCTGTGTGGCACAAAGGAAGCTATTAGTTACTAATGGTACATGTCCACAAATGTGAATGATCCTTATTGCTAGTGTCC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit